Insertion junction: CLIP2.010047_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.010047
Chromosome:plastome
Location:164570
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802324 tic214,orf1995,ycf1,2717035,ChreCp059 Forms with TIC20, TIC56 and TIC100 the 1-MD complex mediating chlorolast protein import CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAAAACAATGAAAACAAATATTGGTGGGACTAAAAGTTTTGCCAATCGTG
Internal bar code:GCACGGTATCAATATGCTAGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:199
LEAP-Seq percent confirming:61.5385
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:GTTGTGATGTGGCAGCTTCC
Suggested primer 2:TCATTACGTCGTGGTTTCCGT