Insertion junction: CLIP2.010238_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.010238
Chromosome:chromosome 12
Location:1486572
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g488050 FFT5 putative fructan fructosyltransferase; (1 of 1) 2.4.1.99//3.2.1.26 - Sucrose:sucrose fructosyltransferase / Sucrose:sucrose 1-fructosyltransferase // Beta-fructofuranosidase / Saccharase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATCTGCACCTGCAGACCGGGGGTTAGCTCGGCTGCCTGCTCCCGCGTTA
Internal bar code:GGCGGGTCGATTCGTTGACCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:514
LEAP-Seq percent confirming:26.9231
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:CGTCAAAAACCTGCTGCGAA
Suggested primer 2:GGAAACGTCTCAGCTCAGCT