Insertion junction: CLIP2.010283_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.010283
Chromosome:chromosome 4
Location:3290411
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g226850 ASP1 (1 of 1) 3.4.23.5 - Cathepsin D; Pepsin-type aspartyl protease intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTTACCATATGTGCACGCCACGTCCTGTCATTCGCATGCTGTCAAGATA
Internal bar code:GGCGGGGATCCTTAAGTTGTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:586
LEAP-Seq percent confirming:27.7778
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:TAGGTCTTGCTCTTGGCTGC
Suggested primer 2:CTACAGGCCTTGCTTCGGAA