Insertion junction: CLIP2.010295_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.010295
Chromosome:chromosome 2
Location:5286799
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g112750 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCTTGCCTGCCCACATAACCCCTCAGCCCCTGAGCCCTTGCCCCCCTCC
Internal bar code:CAGCTTTCCCGCTGACATGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1774
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:AAAGGGTTCAGCTCGGTCAG
Suggested primer 2:GCTTCACATTTCCCGCCATC