Insertion junction: CLIP2.010303_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.010303
Chromosome:chromosome 9
Location:5541618
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00156899

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGGAAGGATTGAAATGGAAAGTACGGTAACAGGTAAAAGGGGGTGATGT
Internal bar code:GGTCGGCTTAGCCGCCCCCGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:2302
LEAP-Seq percent confirming:69.3548
LEAP-Seq n confirming:43
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:62

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGGGGAAGTGAGTCAGG
Suggested primer 2:GAAGAACCGCACACACACAC