Insertion junction: CLIP2.010355_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.010355
Chromosome:chromosome 5
Location:1487605
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g234653 (1 of 781) IPR000104 - Antifreeze protein, type I 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTCACTTCCTGGTAGGGGGTGTTTCCCAGTCCTTGTCTGGGGCCCTGTT
Internal bar code:GTTGGTATTAAGGGTTATAACG

Confirmation - LEAP-Seq

LEAP-Seq distance:473
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:GCAATGTGTTGAGTGTGCGT
Suggested primer 2:CAGACGATTACGAGGAGGCC