Insertion junction: CLIP2.010405_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.010405
Chromosome:chromosome 16
Location:7960030
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g802017 CDS
lncRNA_TCONS_00188039 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGACGCAGGACCGCAAGCAGCCTGGCCAAAAGAGCCAGCGGCAAAGCGGA
Internal bar code:GTCTAGGTAAAGAACATGATTC

Confirmation - LEAP-Seq

LEAP-Seq distance:3245
LEAP-Seq percent confirming:99.1228
LEAP-Seq n confirming:113
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:114

Suggested primers for confirmation by PCR

Suggested primer 1:ACACACAGACGAACGGAGTC
Suggested primer 2:TCAGTACGACGTGTGAAGGC