Insertion junction: CLIP2.010497_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.010497
Chromosome:chromosome 3
Location:7701022
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g203730 DEGO1,DEG12 Inactive Deg protease; (1 of 4) PTHR22939//PTHR22939:SF83 - SERINE PROTEASE FAMILY S1C HTRA-RELATED // PROTEASE DO-LIKE 2, CHLOROPLASTIC CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCGAGCCGAGCTCAGGGCTCTGGGAGGAGCTGCCCACAGCCGCGGTGGC
Internal bar code:CATACACTCTTTTGAATTACCC

Confirmation - LEAP-Seq

LEAP-Seq distance:694
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GCAGTGCGGCTCCATTTAAG
Suggested primer 2:ACCCGTACACGAACACAGTC