Insertion junction: CLIP2.010532_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.010532
Chromosome:chromosome 7
Location:5314315
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g349950 (1 of 1) K03131 - transcription initiation factor TFIID subunit 6 (TAF6) 5'UTR_intron
Cre07.g349966 (1 of 8) 2.3.1.75 - Long-chain-alcohol O-fatty-acyltransferase / Wax synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCGCACAGAGAGCAAAAGAAGCGCGAAGGACCACGATAGAAGACAGTCA
Internal bar code:ACCATTTGTCACTGACAGTAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1348
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CATGATGGCACCCCTGTTCT
Suggested primer 2:AGGCTTGTCATCAGTGGACG