Insertion junction: CLIP2.010582_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.010582
Chromosome:chromosome 10
Location:6479412
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g465050 (1 of 1) PTHR19303//PTHR19303:SF285 - TRANSPOSON // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCATACACCGCGGTGCTCCGCGCGGACAAGTTCGTCATCCTCGTCCTCGA
Internal bar code:ACCCAGGTCAGGAACTCTGGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2661
LEAP-Seq percent confirming:78.5714
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:AAGCCCTGCGTGATGTTCTT
Suggested primer 2:GACATGTGCTGGAACCTGGA