Insertion junction: CLIP2.010600_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.010600
Chromosome:chromosome 12
Location:4078770
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g516650 STPK6,STK6 Serine/threonine protein kinase; (1 of 1) IPR000719//IPR001245//IPR002290//IPR011009//IPR011050//IPR020635 - Protein kinase domain // Serine-threonine/tyrosine-protein kinase catalytic domain // Serine/threonine/dual specificity protein kinase, catalytic domain // Protein kinase-like domain // Pectin lyase fold/virulence factor // Tyrosine-protein kinase, catalytic domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGCACAGATGGAGCCAGGCGTGGTTCGTTTCGGCCGCTGGCGTGACGGC
Internal bar code:CATCGAGCTTTGGTGCCGTGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:3551
LEAP-Seq percent confirming:92.6829
LEAP-Seq n confirming:38
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:CGCATCAATAAGTGCACCGG
Suggested primer 2:CATGCCGACAACCTTGCAAA