Insertion junction: CLIP2.010656_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.010656
Chromosome:chromosome 10
Location:724717
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g422450 GGT1,PGSIP6 (1 of 1) PTHR11183//PTHR11183:SF39 - GLYCOGENIN // PROTEIN GYG-1, ISOFORM A; Plant glycogenin-like starch initiation protein 6 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACTCCTTCTCTCCTATCCTTTCTTGAAATCTCTGCCAGCCTCCTCCTAC
Internal bar code:TGAAGGCATCGATCCGCCATTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1000
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:CGGGCACTTGAAGATGGAGT
Suggested primer 2:GCTCTTTGTGGGGCCATAGT