Insertion junction: CLIP2.010754_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.010754
Chromosome:plastome
Location:174767
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802329 ChreCp064,psbD,2716961 (1 of 1) K02706 - photosystem II P680 reaction center D2 protein (psbD); photosystem II protein D2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTATGGTTACTGCTAACCGTTTCTGGTCACAAATCTTCGGTGTTGCTTT
Internal bar code:GAGCGTATCCAAACAGGCTACG

Confirmation - LEAP-Seq

LEAP-Seq distance:241
LEAP-Seq percent confirming:70.5882
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:TTCGTGTCGCACCCACTTAA
Suggested primer 2:TGACTGGCTTCGTCAAGACC