Insertion junction: CLIP2.010780_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.010780
Chromosome:chromosome 7
Location:2897514
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g332500 AXT2 (1 of 3) PTHR10994:SF69 - PROLINE-RICH PROTEIN 18; Arabinose chain extension enzyme for HRGP 2 3'UTR
Cre07.g332550 PSL1 Signal peptide peptidase, eukaryotic-type; (1 of 1) PTHR12174//PTHR12174:SF23 - SIGNAL PEPTIDE PEPTIDASE // MINOR HISTOCOMPATIBILITY ANTIGEN H13 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACCGATGGCTCTATGCGCCCCACCGTGCCGGAGCTGTGCCTGGCCGCGG
Internal bar code:TTGAAGCATAAGTACACTGATC

Confirmation - LEAP-Seq

LEAP-Seq distance:3585
LEAP-Seq percent confirming:94.7368
LEAP-Seq n confirming:36
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:GATTGGGTTCAATCGACGCG
Suggested primer 2:TCGCTCTACTCCTCGGACAA