Insertion junction: CLIP2.010790_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.010790
Chromosome:chromosome 6
Location:8170387
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00083299

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTGCGGTGTGTATGGAGGGGCCAAGGACCTTATAAACCGCCTGTCACG
Internal bar code:GTCTTGGGGTGTTGTGGTCGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:6038
LEAP-Seq percent confirming:69.3069
LEAP-Seq n confirming:70
LEAP-Seq n nonconfirming:31
LEAP-Seq n unique pos:101

Suggested primers for confirmation by PCR

Suggested primer 1:CTCTCTCTCCAGCCCTTCCT
Suggested primer 2:GCTGAGATAGAACCCGACCG