Insertion junction: CLIP2.010958_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.010958
Chromosome:chromosome 17
Location:5369552
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g738250 (1 of 1) 2.5.1.31 - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl- diphosphate specific) / UPP synthetase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTACACCTGCGCTCGTGTGGGGTCAGCAGATGCCAAGCGTGTGGGTTAAG
Internal bar code:GGGTGAAGTGATTATTTATGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:2279
LEAP-Seq percent confirming:91.5888
LEAP-Seq n confirming:98
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:107

Suggested primers for confirmation by PCR

Suggested primer 1:GGTCTGGGGGTAATTTGGGG
Suggested primer 2:ATATGGGTCCAAGCAACGCA