Insertion junction: CLIP2.010996_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.010996
Chromosome:plastome
Location:124781
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802314 2717041,ChreCp050,atpA (1 of 1) K02111 - F-type H+-transporting ATPase subunit alpha (ATPF1A, atpA); ATP synthase CF1 alpha chain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTCATCGTAAATTGTTAAAGTTGGACGACCTGTGTACATGAAGTACTCA
Internal bar code:CTTTCATACGTTCTTAGACGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:300
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:CGTTGCACGTCGTTCTGTTT
Suggested primer 2:AAACGAGCACCACGAGCTAA