Insertion junction: CLIP2.011020_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.011020
Chromosome:chromosome 14
Location:1197652
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00189783

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGAAACTGCCTCTTGCACCACAAGGGGAAAGCACACCGAGGCGTTCGGAT
Internal bar code:TGTAAGTGCCCAACGTCGTGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2207
LEAP-Seq percent confirming:62.963
LEAP-Seq n confirming:51
LEAP-Seq n nonconfirming:30
LEAP-Seq n unique pos:81

Suggested primers for confirmation by PCR

Suggested primer 1:GGTTGAAACAACATGGGGGC
Suggested primer 2:ATCTGGCCCTTAAACCCACG