Insertion junction: CLIP2.011044_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.011044
Chromosome:chromosome 2
Location:2172047
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g089450 HRP5 Hydroxyproline-rich glycoprotein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTCATTTGGATTCAACCCGTTTTTGGTGACTGCTGTTGTGGTTATTTTT
Internal bar code:CGTATTTGGTGCTAGGTTTCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2231
LEAP-Seq percent confirming:95.8333
LEAP-Seq n confirming:46
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:ATCATCTCTCTGGCCCAGGT
Suggested primer 2:ACCTGATGCTTAGCCACACC