Insertion junction: CLIP2.011054_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.011054
Chromosome:plastome
Location:16479
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802269 ChreCp007,clpP,2717015 (1 of 9) 3.4.21.92 - Endopeptidase Clp / Protease Ti; ATP-dependent Clp protease proteolytic subunit CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTAGAAATGACAAATCAAGTTTGGAGTTATCATGATAGTAAACAAGAAC
Internal bar code:AGTGTTTTGCGGTAAGCCACGT

Confirmation - LEAP-Seq

LEAP-Seq distance:266
LEAP-Seq percent confirming:63.3333
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:GGAAACCTGCGTTCTACCGA
Suggested primer 2:TGGCGGTTCTGTAGGTAATGG