Insertion junction: CLIP2.011167_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.011167
Chromosome:chromosome 5
Location:152988
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00048232

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAGACGACCCTGGGTGAGGGAAAGCTTTCCAGTTGCACGTGGATGCTT
Internal bar code:CGTTTCCCGTATGGCAGCGTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:951
LEAP-Seq percent confirming:25.8065
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:23
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:CATTTGTTCGCCCGTGGATC
Suggested primer 2:GCTGATGTCTGGGGTTTGGA