Insertion junction: CLIP2.011171_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.011171
Chromosome:chromosome 12
Location:3046297
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g501450 SDIR1 RING finger-type E3 ligase, SDIR1 ortholog; (1 of 1) PTHR14155//PTHR14155:SF163 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGGTTGCTGCCTGGCGGCCAACGATACCGGTACCTGCGTGCGCTCTGTC
Internal bar code:GTAGACGATGGGGATCATGTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:884
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:ATCAGCAGCCTCTGTGTTCC
Suggested primer 2:CAACCGCAGCTGACGAAAAA