Insertion junction: CLIP2.011177_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.011177
Chromosome:chromosome 5
Location:1977744
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g236250 Conserved WD40-repeat Protein; (1 of 2) PTHR22847//PTHR22847:SF459 - WD40 REPEAT PROTEIN // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTTGATCACATGCATACGGCGGTACCAGACCGTACAGACTGGTACCAC
Internal bar code:GCACGTTGCACTGCTTGGGTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1069
LEAP-Seq percent confirming:73.3333
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGAGGGCATGCATGTGAA
Suggested primer 2:TGTCGAGTGAGTGGTTCGTG