Insertion junction: CLIP2.011180_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.011180
Chromosome:chromosome 8
Location:1200385
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g363250 (1 of 3) IPR000104//IPR006553 - Antifreeze protein, type I // Leucine-rich repeat, cysteine-containing subtype intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGAACCGAAAGCGCACCCCCACGACCGAGCCCGTCAGCAAGCTACGGTTT
Internal bar code:TGTTGGTTGCACTGATCAAGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1920
LEAP-Seq percent confirming:97.5
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:GTTTTAAAGGGGGAGGGCGA
Suggested primer 2:AGTGAGCATGCCTTACCGTC