Insertion junction: CLIP2.011188_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.011188
Chromosome:chromosome 16
Location:1122696
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g649800 PPR3,CYCR6 (1 of 1) PF02984//PF13041 - Cyclin, C-terminal domain (Cyclin_C) // PPR repeat family (PPR_2); PentatricoPeptide Repeat protein 3 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACGAAACAGCGCACACGGCGCGCAGCCACACGGCTGGTTGCAGGCCCCA
Internal bar code:CGGGACAAGGTGCTGGATAGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2365
LEAP-Seq percent confirming:58.6207
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTTGACCACACGCTTTCC
Suggested primer 2:CTAGTCCGAGCTAACGCAGG