Insertion junction: CLIP2.011226_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.011226
Chromosome:chromosome 7
Location:5241907
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g349250 (1 of 5) IPR011051//IPR013096 - RmlC-like cupin domain // Cupin 2, conserved barrel intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGGTATTGGGCCTATGAATGTTTACTGTTCTGCTCACTATTGCAACCGG
Internal bar code:CCGTACTCTTGTGTCGACTCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:973
LEAP-Seq percent confirming:42.1053
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:GCCTACTCAAAGCTCCTGCA
Suggested primer 2:GAACCTTGGCTGGTGCAAAG