Insertion junction: CLIP2.011227_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.011227
Chromosome:chromosome 13
Location:1931149
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g576100 (1 of 30) PTHR24349//PTHR24349:SF79 - SERINE/THREONINE-PROTEIN KINASE // NITROGEN NETWORK KINASE 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCTCACTCTCCATCCACCGCCGTGCCTACCTGTCTCACTCCTGTTGATG
Internal bar code:TTGCAGCGCGTTGGGTCTTCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:557
LEAP-Seq percent confirming:23.5294
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:GAAGTCGGACTGCCCTTTGA
Suggested primer 2:TAGCGCCAACAACAGCAGTA