Insertion junction: CLIP2.011270_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.011270
Chromosome:chromosome 2
Location:6578789
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g389450 (1 of 1) IPR000104//IPR000504//IPR003613//IPR012677//IPR013083//IPR016024//IPR020683 - Antifreeze protein, type I // RNA recognition motif domain // U box domain // Nucleotide-binding alpha-beta plait domain // Zinc finger, RING/FYVE/PHD-type // Armadillo-type fold // Ankyrin repeat-containing domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATACTGCTGCAGGCTGGGCAACATTCCGCTCAAGCCCAACAAGCTGGCCA
Internal bar code:TTGCAGCACTGTGAGATTGTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2600
LEAP-Seq percent confirming:93.0233
LEAP-Seq n confirming:80
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:86

Suggested primers for confirmation by PCR

Suggested primer 1:CCTTCTGGTAGCGGATGACC
Suggested primer 2:TTAGTGGGATGCACGGTTCC