Insertion junction: CLIP2.011272_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.011272
Chromosome:chromosome 14
Location:449165
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g610750 MAE16 (1 of 11) K03327 - multidrug resistance protein, MATE family (TC.MATE, SLC47A, norM, mdtK, dinF); MATE efflux family protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTCGGACGCTCAGAGAGAAACAGCTTTGGCACTCACAGCAGCACTTGCC
Internal bar code:ATCATTTTCATTGTGCTATCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:369
LEAP-Seq percent confirming:6.25
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:AGCATCACGTTCTGGGTCTG
Suggested primer 2:GCCCAAACATCCCAAACCAC