Insertion junction: CLIP2.011294_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.011294
Chromosome:chromosome 16
Location:4922895
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g686700 (1 of 10) PTHR31867//PTHR31867:SF1 - FAMILY NOT NAMED // EXPANSIN-A1-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAGCAGGAGCGAGCAAGGTGGCGTTGGGGGTCCGGGATACAGGAGGCG
Internal bar code:GAGGCCATAAATCTTTGCGGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1369
LEAP-Seq percent confirming:99.2248
LEAP-Seq n confirming:128
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:129

Suggested primers for confirmation by PCR

Suggested primer 1:GTACCGAATGCCAATGACGC
Suggested primer 2:CTCCTGACCTCCTCTCTGCT