Insertion junction: CLIP2.011295_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.011295
Chromosome:chromosome 17
Location:6495425
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g744497 (1 of 1) PF09783 - Vacuolar import and degradation protein (Vac_ImportDeg) intron
lncRNA_TCONS_00240303 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCACCAAGTCGTCACCAGGGCCCGGAGGGTTGCCTTGCGCCGCACGCCA
Internal bar code:GGTCATCCAGATTGTAATTATA

Confirmation - LEAP-Seq

LEAP-Seq distance:234
LEAP-Seq percent confirming:95.4545
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:GTGAACGGGAAACACACAGC
Suggested primer 2:GGGTTTCCGTTTGACAAGCC