Insertion junction: CLIP2.011481_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.011481
Chromosome:chromosome 17
Location:3381477
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g723100 (1 of 10) PTHR31867:SF1 - EXPANSIN-A1-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCACACGCCGAGACACAGAGCCGGAGATCATTGGCAATGGGCGTCAGAC
Internal bar code:ACTGAAGTAAAAGAGTGCTGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2747
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:60
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:60

Suggested primers for confirmation by PCR

Suggested primer 1:TGTAAGGTGGCAGACGGAAC
Suggested primer 2:GTCGCAGGTGTCGGAGATAG