Insertion junction: CLIP2.011570_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.011570
Chromosome:chromosome 3
Location:8235950
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g200000 (1 of 2) PTHR10183//PTHR10183:SF323 - CALPAIN // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCTTACGGCCAGCCTCGAGAACGATCACTGTAGTTCACGTCAACCCTCT
Internal bar code:AACCTTATTCGTTTCCGTTTCC

Confirmation - LEAP-Seq

LEAP-Seq distance:2410
LEAP-Seq percent confirming:86.747
LEAP-Seq n confirming:72
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:83

Suggested primers for confirmation by PCR

Suggested primer 1:TGTTTGCTGGAGCTGTAGGG
Suggested primer 2:ACGAGCTGGTTGAAGGTGAG