Insertion junction: CLIP2.011578_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.011578
Chromosome:chromosome 6
Location:8169171
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00083299

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGCGGGCCGCATGAGGTAAACCTGCTGATAGATATCGGGATGTAGGCCA
Internal bar code:GCCGGCGGTGAAAAAAGGGGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:3771
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:130
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:130

Suggested primers for confirmation by PCR

Suggested primer 1:CGGTCGGGTTCTATCTCAGC
Suggested primer 2:TCGGGTCAGCTCATGCAAAT