Insertion junction: CLIP2.011774_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.011774
Chromosome:chromosome 13
Location:796030
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g567050 (1 of 1) PF00078//PF05869 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // DNA N-6-adenine-methyltransferase (Dam) (Dam) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACACCGGTGCCCGAGCGCGAAGGCGGCCCCGCATGCGAGGGGGCGCGGC
Internal bar code:AAGGTAGCCAGTGGACTACGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:4477
LEAP-Seq percent confirming:5.55556
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:17
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:TTCTAGGCAGCCAGAACAGC
Suggested primer 2:TCATGGAGACTAGCTGGCCT