Insertion junction: CLIP2.011801_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.011801
Chromosome:chromosome 2
Location:2760311
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g093950 PUMPKIN (1 of 1) 2.7.4.22 - UMP kinase / Uridylate kinase; Putative plastid UMP kinase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGGAGGTGATGGACGAGACGGCCATCACGCTGTGCAAGGAGAACAACAT
Internal bar code:CTTCTCCGAGGGGGCTCGAATA

Confirmation - LEAP-Seq

LEAP-Seq distance:653
LEAP-Seq percent confirming:11.7647
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:AGCCTAGCTGTTCGGCATTT
Suggested primer 2:GAAGGGCAATGGGATTGGGA