Insertion junction: CLIP2.011811_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.011811
Chromosome:chromosome 13
Location:4567345
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g603400 SRH22 (1 of 1) PTHR10799//PTHR10799:SF695 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // RING-FINGER, DEAD-LIKE HELICASE, PHD AND SNF2 DOMAIN-CONTAINING PROTEIN; SNF2-related DNA/RNA helicase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCACACCCACCGCCGCAGGTCACCCGCGCCCGACTGGAGGCGGAGGAGGA
Internal bar code:TTCCTGTCTGTGGGTTATATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:949
LEAP-Seq percent confirming:89.1304
LEAP-Seq n confirming:41
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:46

Suggested primers for confirmation by PCR

Suggested primer 1:CAGGTCCAGGTTTGCTAGGG
Suggested primer 2:CTCCCCCGCTGTACCAATTT