Insertion junction: CLIP2.011821_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.011821
Chromosome:chromosome 17
Location:3228026
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g721600 (1 of 1) K12847 - U4/U6.U5 tri-snRNP-associated protein 2 (USP39, SAD1) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGACCCAACCCAGCCCACAGAGCGCGGGGGAGCGGCCGTCCATGCAAGA
Internal bar code:ACCGTGTTATTGATTCTGGAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:984
LEAP-Seq percent confirming:91.4286
LEAP-Seq n confirming:32
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:TCTATGCGATCGAGTGGCAC
Suggested primer 2:CCCCCGCACTTCATAGGTAC