Insertion junction: CLIP2.011993_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.011993
Chromosome:chromosome 3
Location:3380071
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g166500 (1 of 2) IPR000104//IPR013083 - Antifreeze protein, type I // Zinc finger, RING/FYVE/PHD-type intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCTGACGCTCGGTCACAGCCCCAAGCTCACGTTGTACAACGGCACCCGC
Internal bar code:GGTCGGGTCTAAGGTTCTTCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2731
LEAP-Seq percent confirming:89.6552
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:ATAGGCAGCCTCAACCTTCG
Suggested primer 2:CAGGTGGTCACGTATGTGCT