Insertion junction: CLIP2.012078_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.012078
Chromosome:chromosome 7
Location:4541862
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g343933 EBM6 (1 of 4) K19355 - mannan endo-1,4-beta-mannosidase (MAN); Mannan endo-1%252C4-beta-mannosidase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTTTCCACCGCCCCTCTCCCCATAAGGACTACCGCTTGTAACTCACGC
Internal bar code:GGACTGGAGAAAACAAAGGACA

Confirmation - LEAP-Seq

LEAP-Seq distance:325
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GCCCTACCCTCAACACTTCC
Suggested primer 2:GATGGGAACTGGAAAGGGGG