Insertion junction: CLIP2.012086_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.012086
Chromosome:chromosome 7
Location:4145089
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g342450 SEE3 Putative splicing endonuclease positive effector; (1 of 3) K10706 - senataxin [EC:3.6.4.-] (SETX, ALS4) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGGCGGGGGCGCGGGTGGGGTGCGGGATGACCAGGGATGGATGGTTACG
Internal bar code:GAGCCAGTTTTGTCCCTGGTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:164
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:AGGACCTGCACACATCTTGG
Suggested primer 2:AATTGTTTACACCGGCGCAC