Insertion junction: CLIP2.012180_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.012180
Chromosome:chromosome 5
Location:964646
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g247000 (1 of 1) PF00439//PF00628//PF02791 - Bromodomain (Bromodomain) // PHD-finger (PHD) // DDT domain (DDT) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAGGGGTAGCCATTCATGCGAACGGGTTGTAGTAAACATGGAAGTGCCG
Internal bar code:GTCGTTTTTGAGTATGCCTAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1050
LEAP-Seq percent confirming:95.2381
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:TGTGTGTGTATTCCGCCCTC
Suggested primer 2:CCTACCCTCCCATGCTCTCT