Insertion junction: CLIP2.012207_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.012207
Chromosome:chromosome 6
Location:6703373
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g295200 pCRY,PCRY1,CPH1 Plant-like Cryptochrome photoreceptor; (1 of 1) PTHR11455//PTHR11455:SF18 - CRYPTOCHROME // DEOXYRIBODIPYRIMIDINE PHOTO-LYASE, MITOCHONDRIAL CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTAGAGTGTGATGCGCTGGGCTGGCAGTACGTCAGCGGAGGGATGTCGG
Internal bar code:GCTTCCGCATGCCTGCGCTTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:795
LEAP-Seq percent confirming:29.4118
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CGTGGATGTACTCGGTAGGC
Suggested primer 2:CTGATGTGTGGCTGTTGTGC