Insertion junction: CLIP2.012301_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.012301
Chromosome:chromosome 9
Location:4586415
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g401404 (1 of 41) PTHR32523//PTHR32523:SF8 - FAMILY NOT NAMED // PHYTOL KINASE 1, CHLOROPLASTIC CDS
Cre09.g401441 (1 of 41) PTHR32523//PTHR32523:SF8 - FAMILY NOT NAMED // PHYTOL KINASE 1, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCTCCGTGTGTGTGGCGAAGTAGCCAACGAGCTGCTGCAGGTGCCCGC
Internal bar code:AGGGACCTTTTTGTGCCGGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1865
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:TCGCGGTGCATCGATGATTA
Suggested primer 2:CACCAGTATGCCCACACCTT