Insertion junction: CLIP2.012325_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.012325
Chromosome:chromosome 2
Location:4981068
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g110600 DEG5 (1 of 2) PTHR22939:SF99 - PROTEASE DO-LIKE 8, CHLOROPLASTIC; Deg protease CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGGAGGTGCCCAGGCGGATGGGCGCCAGCGCGGGCACCCATGCGGCAGC
Internal bar code:ATCGTGGGATGCACTGAGAAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2233
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:CAGATCCGGTATCGTGTGGG
Suggested primer 2:CTGCCACCGCCTTACCTAAA