Insertion junction: CLIP2.012389_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.012389
Chromosome:chromosome 7
Location:5241389
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g349250 (1 of 5) IPR011051//IPR013096 - RmlC-like cupin domain // Cupin 2, conserved barrel CDS
lncRNA_TCONS_00101007 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTCTACGCGGCGGCCACCACCGGCGAGGCCTTTGAGCAGCCCGCCGCGG
Internal bar code:TAGAACGATCTACACGAGATCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2748
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:71
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:71

Suggested primers for confirmation by PCR

Suggested primer 1:ACCTCGTTAAAAGGGAGCGG
Suggested primer 2:CTCCCTGCCGTTTGTTACCT