Insertion junction: CLIP2.012425_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.012425
Chromosome:chromosome 14
Location:3112356
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g628400 TSA3 (1 of 3) 6.1.1.7 - Alanine--tRNA ligase / Alanyl-tRNA synthetase; Alanyl-tRNA-synthetase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGAAGTGAATGACAGGGGGCACCGGGCATTGAGTAGCGGTCGATCTGTGA
Internal bar code:AACTGCTGGAGGTTCGTCGCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2760
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:TGCGTGTTTGGAAGCACATG
Suggested primer 2:CCAGGAACGTCAACTCGACA