Insertion junction: CLIP2.012498_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.012498
Chromosome:chromosome 4
Location:3092579
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g225500 CSA6 (1 of 1) PF15066 - Cancer-associated gene protein 1 family (CAGE1); conserved protein of unknown function 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCACCTTGCGCAGCGCGCAGTAAGGGTTGGGGCTCAGGTCCTCCGGCAA
Internal bar code:CGCGTACTTTCTATGACTGGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1291
LEAP-Seq percent confirming:67.9245
LEAP-Seq n confirming:36
LEAP-Seq n nonconfirming:17
LEAP-Seq n unique pos:53

Suggested primers for confirmation by PCR

Suggested primer 1:GGTGAATGCCAGTAGGTGCT
Suggested primer 2:CACGGACAGTTGGTGCTAGT