Insertion junction: CLIP2.012563_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.012563
Chromosome:chromosome 9
Location:5588701
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00156541

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTCCGGCCCGAAGGGAAACCGCCCTTCCCCCAGCTCGCTGCCGACCTTC
Internal bar code:CTCTGATTACGGCCCACTTGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:3066
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:42
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:TCTGCATCGTAAAAGCGGGT
Suggested primer 2:CAGTGGCTGTATCTAGGGCG