Insertion junction: CLIP2.012609_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.012609
Chromosome:chromosome 11
Location:3151873
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g475650 (1 of 11) IPR017956 - AT hook, DNA-binding motif intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCGTAGGCGCGCGCCGCAGGTGTCGGAGTGTGGGCCGGCACCGAAACC
Internal bar code:AGAAGATAACTTTTTTCTCTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2084
LEAP-Seq percent confirming:95.2381
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:AACAGCCAGTATGCACGTGA
Suggested primer 2:CATCCTCGTCCTCGTCTTCG